PEER REVIEWED PUBLICATIONS
2025
2025
Kevin Eloff, Konstantinos Kalogeropoulos, Oliver Morell, Amandla Mabona, Jakob Berg Jespersen, Wesley Williams, Sam van Beljouw, Marcin Skwark, Andreas Hougaard Laustsen, Stan J. J. Brouns, Anne Ljungars, Erwin M. Schoof, Jeroen Van Goey, Ulrich auf dem Keller, Karim Beguir, Nicolas Lopez Carranza, and Timothy P. Jenkins. De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments. bioRxiv (2023).
Isaac Sappington, Martin Toul, David S. Lee, Stephanie A. Robinson, Inna Goreshnik, Clara McCurdy, Tung Ching Chan, Nic Buchholz, Buwei Huang, Dionne Vafeados, Mariana Garcia-Sanchez, Nicole Roullier, Matthias Glögl, Christopher J. Kim, Joseph L. Watson, Susana Vázquez Torres, Koen H. G. Verschueren, Kenneth Verstraete, Cynthia S. Hinck, Melisa Benard-Valle, Brian Coventry, Jeremiah Nelson Sims, Green Ahn, Xinru Wang, Andrew P. Hinck, Timothy P. Jenkins, Hannele Ruohola-Baker, Steven M. Banik, Savvas N. Savvides, David Baker. "Improved protein binder design using beta-pairing targeted RFdiffusion". Nature (2024)
2023
2023
2023
2023
2023
2023
2022
2022
2022
2022
2022
2021
2021
2021
2021
2020
2020
2020
Christoffer V. Sørensen, Line Ledsgaard, Helen H. K. Wildenauer, Camilla H. Dahl, Tasja W. Ebersole, Markus-Frederik Bohn, Anne Ljungars, Timothy P. Jenkins, & Andreas H. Laustsen. Cross-reactivity trends when selecting scFv antibodies against snake toxins using a phage display-based cross-panning strategy. SciRep (2023).
LKonstantinos Kalogeropoulos, Markus-Frederik Bohn, David E. Jenkins, Jann Ledergerber, Christoffer V. Sørensen, Nils Hofmann, Jack Wade, Thomas Fryer, Giang Thi Tuyet Nguyen, Ullrich auf dem Keller, Andreas H. Laustsen, Timothy P. Jenkins. A Comparative Study of Protein Structure Prediction Tools for Challenging Targets: Snake Venom Toxins. Toxicon (2023).
William M. Laprade, Keirah E. Bartlett, Charlotte R. Christensen, Taline D. Kazandjian, Rohit N. Patel, Edouard Crittenden, Charlotte A. Dawson, Marjan Mansourvar, Darian S. Wolff, Thomas J. Fryer, Andreas H. Laustsen, Nicholas R. Casewell, Jose Maria Gutierrez, Steven R. Hall, Timothy P. Jenkins. Machine-learning guided Venom Induced Dermonecrosis Analysis tooL: VIDAL. Sci Rep (2023).
Monica L. Fernández-Quintero, Anne Ljungars, Franz Waibl, Victor Greiff, Jan Terje Andersen, Torelif T. Gjølberg, Timothy P. Jenkins, Bjørn Gunnar Voldborg, Lise Marie Grav, Sandeep Kumar, Guy Georges, Hubert Kettenberger, Klaus R. Liedl, Peter M. Tessier, John McCafferty & Andreas H. Laustsen. Assessing developability early in the discovery process for novel biologics. mAbs (2023).
Line Ledsgaard, Jack Wade, Timothy P. Jenkins, Kim Boddum, Irina Oganesyan, Julian A. Harrison, Pedro Villar, Rachael A. Leah, Renato Zenobi, Sanne Schoffelen, Bjørn Voldborg, Anne Ljungars, John McCafferty, Bruno Lomonte, José M. Gutiérrez, Andreas H. Laustsen & Aneesh Karatt-Vellatt. Discovery and optimization of a broadly-neutralizing human monoclonal antibody against long-chain α-neurotoxins from snakes. Nat Commun (2023).
Marina Papaiakovou, Natalia Fraija-Fernández, Katherine James, Andrew G. Briscoe, Andie Hall, Timothy P. Jenkins, Julia Dunn, Bruno Levecke, Zeleke Mekonnen, Piet Cools, Stephen R. Doyle, Cinzia Cantacessi, DTJ Littlewood. Evaluation of genome skimming to detect and characterise human and livestock helminths. Parasitol. Int. (2023).
Timothy P. Jenkins, Nicolas Lopez Carranza, Amy Bray, Karim Beguir, Andreas H. Laustsen. Can hackathons unlock a new talent pool from the developing world? Nat Biotechnol (2022).
Timothy P. Jenkins, William Michael Laprade, Andrés Sánchez, Tulika Tulika, Carol O’Brien, Christoffer V. Sørensen, Trenton K. Stewart, Thomas Fryer, Andreas H. Laustsen, José María Gutiérrez. AHA: AI-guided tool for the quantification of venom-induced haemorrhage in mice. Front. Trop. Dis (2022).
Andreas H. Laustsen, Bengt H. Gless, Timothy P. Jenkins, Maria Meyhoff-Madsen, Johanna Bjärtun, Andreas S. Munk, Saioa Oscoz, Julián Fernández, José María Gutiérrez, Bruno Lomonte, Brian Lohse. “In vivo neutralization of Myotoxin II, a phospholipase A2 homolog from Bothrops asper venom, using peptides discovered via phage display technology”. ACS Omega (2022).
Wei-qiao Rao, Konstantinos Kalogeropoulos, Morten E. Allentoft, Shyam Gopalakrishnan, Weining Zhao, Christopher T. Workman, Cecilie Knudsen, Belén Jiménez-Mena, Lorenzo Seneci, Mahsa Mousavi-Derazmahalleh, Timothy P. Jenkins, Si-qi Liu, Andreas H. Laustsen “The rise of genomics in snake venom research: recent advances and future perspectives”. GigaScience (2022), 11.
Esperanza Rivera-de-Torre, Charlotte Rimbault, Anna D. Jensen, Christoffer Sorensen, Timothy P. Jenkins, Natalie Saez, Yoan Duhoo, Celeste Menuet, Lars Ellgaard, Andreas H. Laustsen. “Strategies for heterologous expression and purification of animal venom toxins”. Frontiers in Bioengineering and Biotechnology (2022), 9.
Timothy P. Jenkins, Shirin Ahmadi, Matyas Bittenbinder, Trenton Keith Stewart, Dilber E. Akgun, Melissa Hale, Nafiseh N. Nasrabadi, Darian S. Wolff, Freek J. Vonk, Jeroen Kool, and Andreas H. Laustsen. “Terrestrial venomous animals and the envenomings they cause in the Middle East and North Africa”. PLoS NTD (2021), 15 (12).
Nicolai Rügen, Timothy P. Jenkins, Natalie Wielsch, Heiko Vogel, Benjamin-Florian Hempel, Roderich D. Süssmuth, Stuart Ainsworth, Alejandro Cabezas-Cruz, Andreas Vilcinskas, and Miray Tonk. "Hexapod Assassins’ Potion: Venom Composition and Bioactivity from the Eurasian Assassin Bug Rhynocoris iracundus." Biomedicines 9, no. 7 (2021): 819.
Timothy P. Jenkins, David I. Pritchard, Gary Telford, Radu Tanasescu, Cris S. Constantinescu, and Cinzia Cantacessi. “Longitudinal changes in the gut microbiome of human volunteers with remitting-relapsing multiple sclerosis following experimental infection with the hookworm, Necator americanus”. BMC Biology (2021), 19, 74.
Andreas H. Laustsen, Victor Greiff, Aneesh Karatt-Vellatt, Serge Muyldermans, Timothy P. Jenkins. “Animal immunization, in vitro display technologies, and machine learning for antibody discovery”. Trends in Biotechnology (2021).
Timothy P. Jenkins and Andreas H. Laustsen. “Cost of manufacturing for recombinant snakebite antivenoms”. Frontiers in Bioengineering and Biotechnology (2020), 8.
Timothy P. Jenkins, Kamille E. Krause, Carina Skaarup, Mikael Engmark, Nicholas Casewell, Robert Harrison, Stuart Ainsworth, Bruno Lomonte, Julián Fernández, José María Gutiérrez, Andreas H. Laustsen, and Ole Lund. “An interactive database for the investigation of high-density peptide microarray guided interaction patterns and antivenom cross-reactivity”. PLoS Neglected Tropical Diseases, (2020), 14, 6.
Radu Tanasescu, Christopher R. Tench, Cris S. Constantinescu, Gary Telford, Sonika Singh, Nanci Frakich, David Onion, Dorothee P. Auer, Bruno Gran, Nikos Evangelou, Yasser Falah, Colin Renshaw, Cinzia Cantacessi, Timothy P. Jenkins and David I. Pritchard. “Hookworm Treatment for Relapsing Multiple Sclerosis: A Randomized Double-Blinded Placebo-Controlled Trial”. JAMA Neurolology, (2020), published online.
2024
2024
2024
2023
2023
2023
2023
Timothy Patrick Jenkins, Norbert Ács, Emma Wenzel Horsted, Abbie Williams, Ágnes Duzs, Ioanna Chatzigiannidou, Michael Pichler, Tiia Kittilä, Laura Peachey, Lone Gram, Nuria Canibe, Andreas Hougaard Laustsen, Susanne Brix, and Sandra Wingaard Thrane. "Protecting the piglet gut microbiota against ETEC-mediated post-weaning diarrhea using specific binding proteins." npj Biofilms and Microbiomes (2024).
Keirah E Bartlett, Steven R Hall, Sean A Rasmussen, Edouard Crittenden, Charlotte A Dawson, Laura-Oana Albulescu, William Laprade, Robert A Harrison, Anthony J Saviola, Cassandra M Modahl, Timothy P Jenkins, Mark C Wilkinson, José María Gutiérrez, Nicholas R Casewell. "Dermonecrosis caused by spitting cobra snakebite results from toxin potentiation and is prevented by the repurposed drug varespladib." PNAS (2024).
Christoffer V Sørensen, Nils Hofmann, Puneet Rawat, Frederik V Sørensen, Anne Ljungars, Victor Greiff, Andreas H Laustsen, Timothy P Jenkins. ”ExpoSeq: simplified analysis of high-throughput sequencing data from antibody discovery campaigns”. Bioinformatics Advances (2024).
Katie Bull, Gareth Davies, Timothy P. Jenkins, and Laura Peachey. "The faecal microbiome of Exmoor ponies shows step‐wise compositional changes with increasing levels of management by humans." Equine Veterinary Journal (2023).
Kevin Eloff, Konstantinos Kalogeropoulos, Oliver Morell, Amandla Mabona, Jakob Berg Jespersen, Wesley Williams, Sam van Beljouw, Marcin Skwark, Andreas Hougaard Laustsen, Stan J. J. Brouns, Anne Ljungars, Erwin M. Schoof, Jeroen Van Goey, Ulrich auf dem Keller, Karim Beguir, Nicolas Lopez Carranza, and Timothy P. Jenkins. De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments. bioRxiv (2023).
Andreas V. Madsen, Oscar Mejias-Gomez, Kerstin Skovgaard, Lasse E. Pedersen, J. Preben Morth, Peter Kristensen, Timothy P. Jenkins, & Steffen Goletz. Characterizing antibody binding interfaces: a computational analysis of 1833 experimentally determined antibody:antigen 3D structures. Computational and Structural Biotechnology Journal (2023).
Oscar Mejias-Gomez, Andreas V. Madsen, Kerstin Skovgaard, Lasse E. Pedersen, J. Preben Morth, Timothy P. Jenkins, Peter Kristensen, and Steffen Goletz. A Window into the Human Immune System: Comprehensive Characterization of the Complexity of Antibody Complementary Determining Regions in functional antibodies. mAbs (2023).